HELM-BERT: A Transformer for Medium-sized Peptide Property Prediction

Overview

Oral presentation at the CBI Society Annual Meeting 2025 on HELM-BERT, a transformer-based language model designed for medium-sized peptide property prediction using HELM notation. This presentation received the Oral Presentation Award.

Session: O03-02

Authors: Seungeon Lee, Takuto Koyama, Itsuki Maeda, Atsuyuki Matsumoto, Yasushi Okuno

Affiliation: Kyoto University Graduate School of Medicine, Department of Biomedical Data Intelligence